VIRsiRNAdb

../../tmp/servers/virsirnadb/342500906
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1824	1	`cagacatggtgcgaagagt`	19
X67706.1	Coxsackievirus B5 complete genome	410	`...................`	428	100
M33854.1	CXA3CG Coxsackievirus B3 (CVB3) complete genome	408	`...................`	426	100
M16572.1	CXA3G Coxsackievirus B3, complete genome	407	`...................`	425	100
M88483.1	CXAB3CG Coxsackievirus B3 mRNA, complete genome	409	`...................`	427	100
S76772.1	polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive	411	`...................`	429	100
U57056.1	CXU57056 Coxsackievirus B3 Woodruff variant, complete genome	409	`...................`	427	100
AF231763.1	Coxsackievirus B3 strain 31-1-93, complete genome	409	`...................`	427	100
AF231764.1	Coxsackievirus B3 strain P, complete genome	409	`...................`	427	100
AF231765.1	Coxsackievirus B3 strain PD, complete genome	409	`...................`	427	100
AY036579.1	Human echovirus 7 strain Wallace polyprotein gene, complete cds	409	`...................`	427	100
AF311939.1	Human coxsackievirus B4 strain E2 variant, complete genome	411	`...................`	429	100
AF328683.1	Human coxsackievirus B4 polyprotein-like gene, complete sequence	409	`...................`	427	100
AF465516.1	Human echovirus 7 strain Wallace, complete genome	409	`...................`	427	100
AY302543.1	Human echovirus 17 strain CHHE-29 complete genome	410	`...................`	428	100
AY302546.1	Human echovirus 20 strain JV-1 complete genome	409	`...................`	427	100
AY302548.1	Human echovirus 24 strain DeCamp complete genome	409	`...................`	427	100
AY302549.1	Human echovirus 25 strain JV-4 complete genome	408	`...................`	426	100
AY302552.1	Human echovirus 29 strain JV-10 complete genome	409	`...................`	427	100
AY302553.1	Human echovirus 3 strain Morrisey complete genome	410	`...................`	428	100
AY302556.1	Human echovirus 33 strain Toluca-3 complete genome	409	`...................`	427	100
AY302559.1	Human echovirus 7 strain Wallace complete genome	409	`...................`	427	100
AY752945.1	Human coxsackievirus B3 strain 0, complete genome	409	`...................`	427	100
AY752946.1	Human coxsackievirus B3 strain 20, complete genome	409	`...................`	427	100
EU147493.1	Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds	408	`...................`	426	100
AY752944.2	Human coxsackievirus B3 strain 28, complete genome	409	`...................`	427	100
GQ279371.1	Human coxsackievirus A16 strain SZ/HK08-7, complete genome	413	`...................`	431	100
HQ269389.1	Human coxsackievirus A16 isolate XM-CA16-3560, complete genome	413	`...................`	431	100
AY302551.1	Human echovirus 27 strain Bacon complete genome	411	`.................._`	428	94
AY302551.1	Human echovirus 27 strain Bacon complete genome	2727	`_..........._______`	2737	57
AY843298.1	Human enterovirus 80 strain USA/CA67-10387, complete genome	411	`_..................`	428	94
AJ849942.1	Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/	409	`.................._`	426	94
FJ172447.1	Human echovirus 4 strain AUS250G, complete genome	415	`_..................`	432	94
AY421760.1	Human coxsackievirus A2 strain Fleetwood, complete genome	409	`.................._`	426	94
X54521.1	Swine vesicular disease virus complete genomic RNA	408	`.t.................`	426	94
D00627.1	CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G	410	`.t.................`	428	94
D16364.1	SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd	409	`.t.................`	427	94
X80059.1	Echo Virus 11 genomic DNA	411	`.g.................`	429	94
X84981.1	Echovirus 9 (strain Hill), complete genome	407	`.g.................`	425	94
U16283.1	E6U16283 Echovirus 6 lytic strain, complete genome	408	`.t.................`	426	94
D00435.1	SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl	409	`.t.................`	427	94
AF039205.1	Coxsackievirus B6 strain Schmitt, complete genome	410	`.t.................`	428	94
AF083069.1	Echovirus 5, complete genome	410	`.t.................`	428	94
AF105342.1	Coxsackievirus B6 strain Schmitt, complete genome	410	`.t.................`	428	94
AF114384.1	Coxsackievirus B6 strain Schmitt, complete genome	409	`.t.................`	427	94
AF029859.2	Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen	410	`......c............`	428	94
AF268065.1	Swine vesicular disease virus strain NET/1/92, complete genome	409	`.t.................`	427	94
AF241359.1	Enterovirus CA55-1988, complete genome	411	`.c.................`	429	94
AY036578.1	Human echovirus 7 strain UMMC polyprotein gene, complete cds	408	`.t.................`	426	94
AJ276224.1	Human echovirus 11 genomic RNA for polyprotein	409	`.t.................`	427	94
AF524867.1	Human echovirus 9 isolate DM, complete genome	409	`.t.................`	427	94
AY186745.1	Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds	389	`.t.................`	407	94
AY186746.1	Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds	389	`.t.................`	407	94
AY186747.1	Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds	389	`.t.................`	407	94
AY186748.1	Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds	389	`.t.................`	407	94
AJ493062.2	Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496	409	`.t.................`	427	94
AF465517.1	Human echovirus 6 strain Charles, complete genome	409	`.t.................`	427	94
AF465518.1	Human echovirus 2 strain Cornelis, complete genome	408	`.t.................`	426	94
AY302539.1	Human echovirus 13 strain Del Carmen complete genome	409	`.c.................`	427	94
AY302540.1	Human echovirus 14 strain Tow complete genome	408	`.t.................`	426	94
AY302541.1	Human echovirus 15 strain CH 96-51 complete genome	410	`.t.................`	428	94
AY302545.1	Human echovirus 2 strain Cornelis complete genome	408	`.t.................`	426	94
AY302547.1	Human echovirus 21 strain Farina complete genome	409	`...........t.......`	427	94
AY302557.1	Human echovirus 4 strain Pesacek complete genome	409	`...........t.......`	427	94
AY302558.1	Human echovirus 6 strain D'Amori complete genome	409	`.t.................`	427	94
AY429470.1	Swine vesicular disease virus strain HK'70, complete genome	409	`.t.................`	427	94
AY556057.1	Enterovirus 74 strain USA/CA75-10213, complete genome	409	`.t.................`	427	94
AY556070.1	Enterovirus 75 strain USA/OK85-10362, complete genome	415	`.t.................`	433	94
AJ577589.1	Human echovirus 11, isolate HUN-1108, complete virion genome	411	`.t.................`	429	94
AJ577590.1	Human echovirus 11, isolate FIN-0666, complete virion genome	411	`.t.................`	429	94
AJ577594.1	Human echovirus 11, isolate ROU-9191, complete virion genome	411	`.t.................`	429	94
AY875692.1	Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome	412	`.t.................`	430	94
AY896762.1	Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein	389	`.c.................`	407	94
AY843300.1	Human enterovirus 82 strain USA/CA64-10390, complete genome	412	`...........t.......`	430	94
AY843300.1	Human enterovirus 82 strain USA/CA64-10390, complete genome	2752	`_..........._______`	2762	57
AY843301.1	Human enterovirus 83 strain USA/CA76-10392, complete genome	409	`.t.................`	427	94
AY843302.1	Human enterovirus 77 strain USA/TX97-10394, complete genome	416	`.g.................`	434	94
AY843305.1	Human enterovirus 87 strain BAN01-10396, complete genome	410	`.t.................`	428	94
AY843307.1	Human enterovirus 97 strain BAN99-10355, complete genome	409	`.t.................`	427	94
AY843308.1	Human enterovirus 101 strain CIV03-10361, complete genome	409	`..a................`	427	94
DQ246620.1	Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome	410	`.t.................`	428	94
DQ902712.1	Human enterovirus 84 isolate CIV2003-10603, complete genome	411	`.t.................`	429	94
EF174468.1	Human coxsackievirus B2 isolate KOR 04-243, complete genome	409	`.t.................`	427	94
EF174468.1	Human coxsackievirus B2 isolate KOR 04-243, complete genome	7400	`_______..........._`	7410	57
EF174469.1	Human coxsackievirus B2 isolate KOR 04-279, complete genome	409	`.t.................`	427	94
EF634316.1	Human echovirus 11 strain D207, complete genome	412	`.t.................`	430	94
EU887278.1	Swine vesicular disease virus SVDV01, complete genome	409	`.t.................`	427	94
EU887279.1	Swine vesicular disease virus SVDV02, complete genome	409	`.t.................`	427	94
EU887280.1	Swine vesicular disease virus SVDV03, complete genome	409	`.t.................`	427	94
EU887281.1	Swine vesicular disease virus SVDV04, complete genome	409	`.t.................`	427	94
EU887282.1	Swine vesicular disease virus SVDV, complete genome	409	`.t.................`	427	94
AB426611.1	Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227	409	`.t.................`	427	94
FJ000001.1	Human coxsackievirus B3 strain Fuyang19, complete genome	408	`.t.................`	426	94
GQ141875.1	Human coxsackievirus B3 strain Beijing0811, complete genome	410	`.t.................`	428	94
AB501330.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	410	`.t.................`	428	94
AB501331.1	Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)-	410	`.t.................`	428	94
AB501332.1	Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)-	410	`.t.................`	428	94
AF177911.1	Coxsackievirus A16 polyprotein gene, complete cds	413	`...........t.......`	431	94
AY421761.1	Human coxsackievirus A3 strain Olson, complete genome	410	`.g.................`	428	94
AY421762.1	Human coxsackievirus A4 strain High Point, complete genome	414	`...........t.......`	432	94
AY421763.1	Human coxsackievirus A5 strain Swartz, complete genome	408	`...........t.......`	426	94
AY421763.1	Human coxsackievirus A5 strain Swartz, complete genome	5787	`____..........t.g..`	5773	68
AY421765.1	Human coxsackievirus A7 strain Parker, complete genome	409	`.g.................`	427	94
AY421768.1	Human coxsackievirus A12 strain Texas-12, complete genome	412	`.t.................`	430	94
AY421769.1	Human coxsackievirus A14 strain G-14, complete genome	416	`...........t.......`	434	94
AY790926.1	Human coxsackievirus A16 strain shzh00-1, complete genome	413	`...........t.......`	431	94
DQ133458.1	Human enterovirus 71 strain 984 polyprotein gene, complete cds	407	`.g.................`	425	94
DQ133458.1	Human enterovirus 71 strain 984 polyprotein gene, complete cds	5794	`____..........t.g..`	5780	68
DQ133459.1	Human enterovirus 71 strain 1235 polyprotein gene, complete cds	407	`.g.................`	425	94
DQ133459.1	Human enterovirus 71 strain 1235 polyprotein gene, complete cds	5794	`____..........t.g..`	5780	68
DQ341366.1	Human enterovirus 71 isolate SB2864-SAR-00, complete genome	411	`.g.................`	429	94
AM396587.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P	411	`.g.................`	429	94
EF373576.1	Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet	407	`.g.................`	425	94
EF373576.1	Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet	5794	`____..........t.g..`	5780	68
EU131776.1	Human enterovirus 71 strain N3340-TW-02, complete genome	407	`.g.................`	425	94
EU131776.1	Human enterovirus 71 strain N3340-TW-02, complete genome	5794	`____..........t.g..`	5780	68
EU262658.1	Human coxsackievirus A16 strain shzh05-1, complete genome	413	`...........t.......`	431	94
FJ194964.1	Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome	407	`.g.................`	425	94
FJ194964.1	Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome	5794	`____..........t.g..`	5780	68
FJ198212.1	Human coxsackievirus A16 strain GZ08, complete genome	413	`...........t.......`	431	94
FJ606448.1	Human enterovirus 71 strain BJ08-Z011-4, complete genome	407	`...........t.......`	425	94
FJ606448.1	Human enterovirus 71 strain BJ08-Z011-4, complete genome	5794	`____..........t.g..`	5780	68
GQ994989.1	Human enterovirus 71 strain Chongqing1-09-China, complete genome	408	`.g.................`	426	94
GQ994989.1	Human enterovirus 71 strain Chongqing1-09-China, complete genome	5795	`____..........t.g..`	5781	68
GQ279369.1	Human enterovirus 71 strain SZ/HK08-5, complete genome	407	`.g.................`	425	94
GQ279369.1	Human enterovirus 71 strain SZ/HK08-5, complete genome	5794	`____..........t.g..`	5780	68
HQ407557.1	Human enterovirus 71 strain LN009, complete genome	407	`...........t.......`	425	94
HQ407557.1	Human enterovirus 71 strain LN009, complete genome	5794	`____..........t.g..`	5780	68
AB550338.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	406	`.g.................`	424	94
AB550338.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	5793	`____..........t.g..`	5779	68
AB550339.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	406	`.g.................`	424	94
AB550339.1	Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat	5793	`____..........t.g..`	5779	68
HQ325852.1	Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome	408	`...........t.......`	426	94
HQ325852.1	Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome	5795	`____..........t.g..`	5781	68
HQ456307.1	Human enterovirus A strain GZ2010-120, complete genome	407	`...........t.......`	425	94
HQ456307.1	Human enterovirus A strain GZ2010-120, complete genome	5794	`____..........t.g..`	5780	68
HQ456313.1	Human enterovirus A strain GZ2010-95, complete genome	407	`...........t.......`	425	94
AY302550.1	Human echovirus 26 strain Coronel complete genome	410	`__.................`	426	89
AY302550.1	Human echovirus 26 strain Coronel complete genome	2745	`_..........._______`	2755	57
AY843304.1	Human enterovirus 86 strain BAN00-10354, complete genome	411	`__.................`	427	89
AF316321.2	Enterovirus 5865/sin/000009, complete genome	413	`__.................`	429	89
AF352027.1	Enterovirus 5666/sin/002209, complete genome	413	`__.................`	429	89
AY465356.1	Human enterovirus 71 strain SHZH03, complete genome	409	`__.................`	425	89
AY465356.1	Human enterovirus 71 strain SHZH03, complete genome	5794	`____..........t.g..`	5780	68
AY697459.1	Human enterovirus 89 polyprotein gene, complete cds	411	`__.................`	427	89
DQ341354.1	Human enterovirus 71 isolate 3799-SIN-98, complete genome	414	`__.................`	430	89
DQ341362.1	Human enterovirus 71 isolate SB12736-SAR-03, complete genome	414	`__.................`	430	89
DQ341363.1	Human enterovirus 71 isolate S19841-SAR-03, complete genome	414	`__.................`	430	89
DQ341364.1	Human enterovirus 71 isolate 5511-SIN-00, complete genome	414	`__.................`	430	89
DQ341365.1	Human enterovirus 71 isolate PP37-MAL-01, complete genome	413	`__.................`	429	89
DQ341367.1	Human enterovirus 71 isolate MY821-3-SAR-97, complete genome	413	`__.................`	429	89
DQ341368.1	Human enterovirus 71 isolate MY104-9-SAR-97, complete genome	413	`__.................`	429	89
AM396586.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	413	`__.................`	429	89
AM396588.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	404	`__.................`	420	89
EF373575.1	Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet	415	`__.................`	431	89
EU364841.1	Human enterovirus 71 strain 26M/AUS/4/99, complete genome	414	`__.................`	430	89
EU376004.1	Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome	414	`__.................`	430	89
EU376005.1	Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome	414	`__.................`	430	89
AB469182.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E	412	`__.................`	428	89
AB469183.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71	412	`__.................`	428	89
AB550334.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o	412	`__.................`	428	89
AB550335.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L	412	`__.................`	428	89
AB550336.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o	414	`__.................`	430	89
AB550337.1	Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L	414	`__.................`	430	89
AB575911.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	349	`__.................`	365	89
AB575912.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108	362	`__.................`	378	89
AB575913.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119	339	`__.................`	355	89
AB575914.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170	348	`__.................`	364	89
AB575915.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944	358	`_................._`	374	89
AB575927.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 113	349	`__.................`	365	89
AB575928.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 115	350	`__.................`	366	89
X05690.1	Coxsackievirus B4 complete genome	410	`...........t......_`	427	89
AF230973.1	AF230973 Enterovirus Yanbian 96-83csf, complete genome	416	`_..........t.......`	433	89
AY302554.1	Human echovirus 31 strain Caldwell complete genome	408	`...........a......_`	425	89
AY673831.1	Human coxsackievirus B3 strain GA, complete genome	410	`.t................_`	427	89
AY843297.1	Human enterovirus 79 strain USA/CA79-10384, complete genome	412	`_..........t.......`	429	89
DQ480420.1	Human coxsackievirus B4 strain Tuscany, complete genome	410	`...........t......_`	427	89
AY421766.1	Human coxsackievirus A8 strain Donovan, complete genome	410	`.t................_`	427	89
DQ341355.1	Human enterovirus 71 isolate 06-KOR-00, complete genome	409	`.t................_`	426	89
DQ341356.1	Human enterovirus 71 isolate 03-KOR-00, complete genome	409	`.t................_`	426	89
EF063152.1	Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd	409	`.t................_`	426	89
U22522.1	ETU22522 Human enterovirus 71 polyprotein gene, complete cds	413	`__................_`	428	84
AY697458.1	Human enterovirus 76 polyprotein gene, complete cds	412	`___................`	427	84
DQ341358.1	Human enterovirus 71 isolate S40221-SAR-00, complete genome	411	`__................_`	426	84
DQ341359.1	Human enterovirus 71 isolate S10862-SAR-98, complete genome	411	`__................_`	426	84
DQ341361.1	Human enterovirus 71 isolate 1M-AUS-12-00, complete genome	411	`__................_`	426	84
EF667343.1	Simian enterovirus 46 strain RNM5, complete genome	410	`__................_`	425	84
EF667344.1	Human enterovirus 92 strain RJG7, complete genome	410	`__................_`	425	84
AF326764.2	Simian enterovirus 46 strain OM22 (P15), complete genome	409	`__................_`	424	84
EU414334.1	Human enterovirus 71 strain PLday4-CH-06, complete genome	410	`__................_`	425	84
EU414335.1	Human enterovirus 71 strain PLday1-CH-06, complete genome	410	`__................_`	425	84
AB482183.1	Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya	414	`__................_`	429	84
HQ189392.1	Human enterovirus 71 isolate HUN/1978, complete genome	414	`__................_`	429	84
AB550340.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org	411	`__................_`	426	84
AB550341.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS	411	`__................_`	426	84
AB575916.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 161	350	`__................_`	365	84
AB575917.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101	365	`__................_`	380	84
AB575918.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 205	350	`__................_`	365	84
AB575923.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202	356	`__................_`	371	84
AB575935.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 480	355	`__................_`	370	84
AB575936.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961	350	`__................_`	365	84
AB575937.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141	323	`__................_`	338	84
AB575938.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	384	`__................_`	399	84
X92886.1	Echovirus 9 (strain Barty), complete genome	408	`.t.........t.......`	426	89
X79047.1	Echovirus type 12, prototype Travis wild type genome	408	`.t.........t.......`	426	89
X77708.1	Echovirus type 12, prototype Travis complete RNA genome	408	`.t.........t.......`	426	89
AF085363.1	Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds	409	`.t.........t.......`	427	89
AF162711.1	Echovirus 30 strain Bastianni, complete genome	411	`.c.........t.......`	429	89
AF081485.1	Coxsackievirus B2 strain Ohio, complete genome	410	`.t.........t.......`	428	89
AF311938.1	Human echovirus 30 strain Bastianni, complete genome	411	`.c.........t.......`	429	89
AF524866.1	Human echovirus 9 strain Barty, complete genome	409	`.t.........t.......`	427	89
AY302542.1	Human echovirus 16 strain Harrington complete genome	409	`.t...............a.`	427	89
AY302544.1	Human echovirus 19 strain Burke complete genome	409	`.g.........t.......`	427	89
AY302555.1	Human echovirus 32 strain PR-10 complete genome	399	`.g.........t.......`	417	89
AY896763.1	Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen	387	`.t.........t.......`	405	89
AY896765.1	Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g	387	`.t.........t.......`	405	89
AY843306.1	Human enterovirus 88 strain BAN01-10398, complete genome	411	`.t.........t.......`	429	89
DQ534205.1	Human echovirus 30 isolate 14916net87, complete genome	411	`.t.........t.......`	429	89
EF371880.2	Human enterovirus B isolate SE-03-78616, complete genome	410	`.t.........t.......`	428	89
EU144042.1	Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c	409	`.t.........t.......`	427	89
AB426610.1	Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601	408	`.t.........t.......`	426	89
FJ357838.1	Human coxsackievirus B3 strain GZ803, complete genome	411	`.t.........t.......`	429	89
GU109481.1	Human coxsackievirus B3 strain SSM-CVB3, complete genome	410	`.t.........t.......`	428	89
AB501329.1	Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2	410	`.t.........t.......`	428	89
HM031191.1	Human echovirus 25 strain HN-2, complete genome	412	`.t.........t.......`	430	89
HM185055.1	Human echovirus 6 strain Echo6/Henan/116/2008, complete genome	410	`.t.........t.......`	428	89
HM185056.1	Human enterovirus B strain EVB/Henan/127/2008, complete genome	387	`.t.........t.......`	405	89
HM777023.1	Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome	410	`.t.........t.......`	428	89
EU703812.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete	407	`.g.........t.......`	425	89
EU703812.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete	5794	`____..........t.g..`	5780	68
EU703813.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete	407	`.g.........t.......`	425	89
EU703813.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete	5794	`____..........t.g..`	5780	68
EU703814.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete	407	`.g.........t.......`	425	89
EU703814.1	Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete	5794	`____..........t.g..`	5780	68
EU812515.1	Human enterovirus 71 strain FY23 from China, complete genome	410	`.g.........t.......`	428	89
EU812515.1	Human enterovirus 71 strain FY23 from China, complete genome	5797	`____..........t.g..`	5783	68
EU864507.1	Human enterovirus 71 isolate EV71/Zhejiang08, complete genome	408	`.g.........t.......`	426	89
EU864507.1	Human enterovirus 71 isolate EV71/Zhejiang08, complete genome	5795	`____..........t.g..`	5781	68
FJ158600.1	Human enterovirus 71 isolate DTID/ZJU-62, complete genome	407	`.g.........t.......`	425	89
FJ158600.1	Human enterovirus 71 isolate DTID/ZJU-62, complete genome	5794	`____..........t.g..`	5780	68
FJ158601.1	Human enterovirus 71 isolate DTID/ZJU-74, complete genome	407	`.g.........t.......`	425	89
FJ158601.1	Human enterovirus 71 isolate DTID/ZJU-74, complete genome	5794	`____..........t.g..`	5780	68
FJ194965.1	Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome	407	`.g.........t.......`	425	89
FJ194965.1	Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome	5794	`____..........t.g..`	5780	68
FJ360544.1	Human enterovirus 71 isolate GZ-08-01, complete genome	406	`.g.........t.......`	424	89
FJ360544.1	Human enterovirus 71 isolate GZ-08-01, complete genome	5793	`____..........t.g..`	5779	68
FJ360545.1	Human enterovirus 71 isolate GZ-08-02, complete genome	407	`.g.........t.......`	425	89
FJ360545.1	Human enterovirus 71 isolate GZ-08-02, complete genome	5794	`____..........t.g..`	5780	68
FJ360546.1	Human enterovirus 71 isolate GZ-08-03, complete genome	406	`.g.........t.......`	424	89
FJ360546.1	Human enterovirus 71 isolate GZ-08-03, complete genome	5793	`____..........t.g..`	5779	68
FJ439769.1	Human enterovirus 71 strain Fuyang-0805, complete genome	407	`.g.........t.......`	425	89
FJ439769.1	Human enterovirus 71 strain Fuyang-0805, complete genome	5794	`____..........t.g..`	5780	68
FJ606447.1	Human enterovirus 71 strain BJ08-Z004-3, complete genome	407	`.g.........t.......`	425	89
FJ606447.1	Human enterovirus 71 strain BJ08-Z004-3, complete genome	5794	`____..........t.g..`	5780	68
FJ606449.1	Human enterovirus 71 strain BJ08-Z020-1, complete genome	407	`.g.........t.......`	425	89
FJ606449.1	Human enterovirus 71 strain BJ08-Z020-1, complete genome	5794	`____..........t.g..`	5780	68
FJ606450.1	Human enterovirus 71 strain BJ08-Z025-5, complete genome	407	`.g.........t.......`	425	89
FJ606450.1	Human enterovirus 71 strain BJ08-Z025-5, complete genome	5794	`____..........t....`	5780	73
FJ713137.1	Human enterovirus 71 strain Shanghai 036-2009, complete genome	409	`.g.........t.......`	427	89
FJ713137.1	Human enterovirus 71 strain Shanghai 036-2009, complete genome	5796	`____..........t.g..`	5782	68
FJ828519.1	Human enterovirus 71 isolate BJ08, complete genome	386	`.g.........t.......`	404	89
FJ828519.1	Human enterovirus 71 isolate BJ08, complete genome	5773	`____..........t.g..`	5759	68
FJ607334.1	Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g	406	`.g.........t.......`	424	89
FJ607334.1	Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g	5793	`____..........t.g..`	5779	68
FJ607335.1	Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g	406	`.g.........t.......`	424	89
FJ607335.1	Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g	5793	`____..........t.g..`	5779	68
FJ607336.1	Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete	405	`.g.........t.......`	423	89
FJ607336.1	Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete	5792	`____..........t.g..`	5778	68
FJ607337.1	Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co	406	`.g.........t.......`	424	89
FJ607337.1	Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co	5793	`____..........t....`	5779	73
FJ607338.1	Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c	406	`.g.........t.......`	424	89
FJ607338.1	Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c	5793	`____..........t.g..`	5779	68
GQ892830.1	Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome	407	`.g.........t.......`	425	89
GQ994988.1	Human enterovirus 71 strain Anhui1-09-China, complete genome	407	`.g.........t.......`	425	89
GQ994988.1	Human enterovirus 71 strain Anhui1-09-China, complete genome	5794	`____..........t.g..`	5780	68
GQ994990.1	Human enterovirus 71 strain Chongqing2-09-China, complete genome	407	`.g.........t.......`	425	89
GQ994990.1	Human enterovirus 71 strain Chongqing2-09-China, complete genome	5794	`____..........t.g..`	5780	68
GQ994991.1	Human enterovirus 71 strain Chongqing3-09-China, complete genome	407	`.g.........t.......`	425	89
GQ994991.1	Human enterovirus 71 strain Chongqing3-09-China, complete genome	5794	`____..........t.g..`	5780	68
GQ994992.1	Human enterovirus 71 strain Henan2-09-China, complete genome	399	`.g.........t.......`	417	89
GQ994992.1	Human enterovirus 71 strain Henan2-09-China, complete genome	5786	`____..........t.g..`	5772	68
GQ994992.1	Human enterovirus 71 strain Henan2-09-China, complete genome	5365	`________...........`	5355	57
GU196833.1	Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet	219	`.g.........t.......`	237	89
GU196833.1	Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet	5606	`____..........t.g..`	5592	68
GU366191.1	Human enterovirus 71 strain Henan10-08-China, complete genome	407	`.g.........t.......`	425	89
GU366191.1	Human enterovirus 71 strain Henan10-08-China, complete genome	5794	`____..........t.g..`	5780	68
GU396280.1	Human enterovirus 71 isolate EV71/Lanzhou01, complete genome	407	`.g.........t.......`	425	89
GU396280.1	Human enterovirus 71 isolate EV71/Lanzhou01, complete genome	5794	`____..........t.g..`	5780	68
GU459070.1	Human enterovirus 71 isolate FY23-K12, complete genome	410	`.g.........t.......`	428	89
GU459070.1	Human enterovirus 71 isolate FY23-K12, complete genome	5797	`____..........t.g..`	5783	68
GU459071.1	Human enterovirus 71 isolate FY23-K14, complete genome	407	`.g.........t.......`	425	89
GU459071.1	Human enterovirus 71 isolate FY23-K14, complete genome	5794	`____..........t.g..`	5780	68
HM003207.1	Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome	407	`.g.........t.......`	425	89
HM003207.1	Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome	5794	`____..........t.g..`	5780	68
GQ279370.1	Human enterovirus 71 strain SZ/HK08-6, complete genome	407	`.g.........t.......`	425	89
GQ279370.1	Human enterovirus 71 strain SZ/HK08-6, complete genome	5794	`____..........t.g..`	5780	68
HM002484.1	Human enterovirus 71 strain BJ67, complete genome	407	`.g.........t.......`	425	89
HM002484.1	Human enterovirus 71 strain BJ67, complete genome	5794	`____..........t.g..`	5780	68
HM002485.1	Human enterovirus 71 strain BJ97, complete genome	407	`.g.........t.......`	425	89
HM002485.1	Human enterovirus 71 strain BJ97, complete genome	5794	`____..........t.g..`	5780	68
HM002486.1	Human enterovirus 71 strain BJ110, complete genome	408	`.g.........t.......`	426	89
HM002486.1	Human enterovirus 71 strain BJ110, complete genome	5795	`____..........t.g..`	5781	68
HM002486.1	Human enterovirus 71 strain BJ110, complete genome	5374	`________...........`	5364	57
HM002487.1	Human enterovirus 71 strain BJ303, complete genome	408	`.g.........t.......`	426	89
HM002487.1	Human enterovirus 71 strain BJ303, complete genome	5795	`____..........t.g..`	5781	68
HM002489.1	Human enterovirus 71 strain BJ398, complete genome	408	`.g.........t.......`	426	89
HM002489.1	Human enterovirus 71 strain BJ398, complete genome	5795	`____..........t.g..`	5781	68
HM053669.1	Human enterovirus 71 strain BJ293, complete genome	407	`.g.........t.......`	425	89
HM053670.1	Human enterovirus 71 strain BJ393, complete genome	407	`.g.........t.......`	425	89
HM053670.1	Human enterovirus 71 strain BJ393, complete genome	5794	`____..........t....`	5780	73
HM053670.1	Human enterovirus 71 strain BJ393, complete genome	5373	`________...........`	5363	57
HM053671.1	Human enterovirus 71 strain BJ462, complete genome	407	`.g.........t.......`	425	89
HM053671.1	Human enterovirus 71 strain BJ462, complete genome	5794	`____..........t.g..`	5780	68
HQ188292.1	Human enterovirus 71 strain Fuyang-0805a, complete genome	410	`.g.........t.......`	428	89
HQ188292.1	Human enterovirus 71 strain Fuyang-0805a, complete genome	5797	`____..........t.g..`	5783	68
HQ426649.1	Human enterovirus 71 strain 2010FJLY008, complete genome	405	`.g.........t.......`	423	89
HQ426649.1	Human enterovirus 71 strain 2010FJLY008, complete genome	5792	`____..........t.g..`	5778	68
HQ891923.1	Human enterovirus 71 strain Shanghai 27-2009, complete genome	408	`.g.........t.......`	426	89
HQ891923.1	Human enterovirus 71 strain Shanghai 27-2009, complete genome	5795	`____..........t.g..`	5781	68
HQ891924.1	Human enterovirus 71 strain Shanghai 28-2009, complete genome	408	`.g.........t.......`	426	89
HQ891924.1	Human enterovirus 71 strain Shanghai 28-2009, complete genome	5795	`____..........t.g..`	5781	68
HQ891925.1	Human enterovirus 71 strain Shanghai 36-2009, complete genome	409	`.g.........t.......`	427	89
HQ891925.1	Human enterovirus 71 strain Shanghai 36-2009, complete genome	5796	`____..........t.g..`	5782	68
HQ891926.1	Human enterovirus 71 strain Shanghai 51-2009, complete genome	408	`.g.........t.......`	426	89
HQ891926.1	Human enterovirus 71 strain Shanghai 51-2009, complete genome	5796	`____..........t.g..`	5782	68
HQ891927.1	Human enterovirus 71 strain Shanghai 64-2009, complete genome	408	`.g.........t.......`	426	89
HQ891927.1	Human enterovirus 71 strain Shanghai 64-2009, complete genome	5795	`____..........t.g..`	5781	68
HQ891928.1	Human enterovirus 71 strain Shanghai 117-2009, complete genome	408	`.g.........t.......`	426	89
HQ891928.1	Human enterovirus 71 strain Shanghai 117-2009, complete genome	5795	`____..........t.g..`	5781	68
HQ891929.1	Human enterovirus 71 strain Shanghai 118-2009, complete genome	408	`.g.........t.......`	426	89
HQ891929.1	Human enterovirus 71 strain Shanghai 118-2009, complete genome	5795	`____..........t.g..`	5781	68
HQ423142.1	Human enterovirus 71 strain KMM/09, complete genome	407	`.g.............a...`	425	89
HQ423142.1	Human enterovirus 71 strain KMM/09, complete genome	5794	`____..........t.g..`	5780	68
HQ456305.1	Human enterovirus A strain GZ2010-156, complete genome	407	`.g.........t.......`	425	89
HQ456305.1	Human enterovirus A strain GZ2010-156, complete genome	5794	`____..........t.g..`	5780	68
HQ456306.1	Human enterovirus A strain GZ2010-134, complete genome	407	`.g.........t.......`	425	89
HQ456306.1	Human enterovirus A strain GZ2010-134, complete genome	5794	`____..........t.g..`	5780	68
HQ456308.1	Human enterovirus A strain GZ2010-118, complete genome	407	`.g.........t.......`	425	89
HQ456308.1	Human enterovirus A strain GZ2010-118, complete genome	5794	`____..........t....`	5780	73
HQ456309.1	Human enterovirus A strain GZ08-831, complete genome	407	`.g.........t.......`	425	89
HQ456309.1	Human enterovirus A strain GZ08-831, complete genome	5794	`____..........t.g..`	5780	68
HQ456310.1	Human enterovirus A strain GZ08-530, complete genome	407	`.g.........t.......`	425	89
HQ456310.1	Human enterovirus A strain GZ08-530, complete genome	5794	`____..........t.g..`	5780	68
HQ456311.1	Human enterovirus A strain GZ08-522, complete genome	407	`.g.........t.......`	425	89
HQ456311.1	Human enterovirus A strain GZ08-522, complete genome	5794	`____..........t.g..`	5780	68
HQ456312.1	Human enterovirus A strain GZ08-520, complete genome	407	`.g.........t.......`	425	89
HQ456312.1	Human enterovirus A strain GZ08-520, complete genome	5794	`____..........t.g..`	5780	68
HQ611148.1	Human enterovirus 71 strain AH08/06, complete genome	407	`.g.........t.......`	425	89
HQ611148.1	Human enterovirus 71 strain AH08/06, complete genome	5794	`____..........t.g..`	5780	68
JN001860.1	Human enterovirus 71 strain NB/2010/01, complete genome	408	`.g.........t.......`	426	89
JN001860.1	Human enterovirus 71 strain NB/2010/01, complete genome	5795	`____..........t.g..`	5781	68
AF114383.1	Coxsackievirus B5 strain Faulkner, complete genome	412	`__.........t.......`	428	84
AF317694.1	Human echovirus 18 strain Metcalf polyprotein gene, complete cds	409	`__.........t.......`	425	84
AY302560.1	Enterovirus 69 strain Toluca-1 complete genome	413	`__.........t.......`	429	84
HM775882.1	Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome	409	`__.........t.......`	425	84
AY421764.1	Human coxsackievirus A6 strain Gdula, complete genome	414	`__.........t.......`	430	84
AY421767.1	Human coxsackievirus A10 strain Kowalik, complete genome	414	`__.........t.......`	430	84
AJ586873.1	Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89	413	`__.........t.......`	429	84
EU812514.1	Human coxsackievirus A16 strain FY18 from China, complete genome	417	`__..........a......`	433	84
FJ461781.1	Human enterovirus 71 isolate NUH0083/SIN/08, complete genome	378	`__.........t.......`	394	84
HM002488.1	Human enterovirus 71 strain BJ366, complete genome	409	`__.........t.......`	425	84
HM002488.1	Human enterovirus 71 strain BJ366, complete genome	5794	`____..........t.g..`	5780	68
AY843303.1	Human enterovirus 85 strain BAN00-10353, complete genome	409	`.t.........t......_`	426	84
AF119795.2	Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds	408	`.t.........t......_`	425	84
AF136379.1	Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds	410	`.t.........t......_`	427	84
AF119796.3	Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds	408	`.t.........t......_`	425	84
AF176044.1	Enterovirus 71 polyprotein gene, complete cds	411	`.t.........t......_`	428	84
AF304457.1	Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds	410	`.t.........t......_`	427	84
AF304458.1	Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds	410	`.t.........t......_`	427	84
AF304459.1	Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds	410	`.t.........t......_`	427	84
DQ060149.1	Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome	410	`.t.........t......_`	427	84
DQ341357.1	Human enterovirus 71 isolate 7F-AUS-6-99, complete genome	409	`.t.........t......_`	426	84
DQ381846.1	Human enterovirus 71 strain 6F/AUS/6/99, complete genome	409	`.t.........t......_`	426	84
AM396584.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	408	`.t.........t......_`	425	84
AM396585.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	408	`.t.........t......_`	425	84
FJ172159.1	Human enterovirus 71 isolate NUH0075/SIN/08, complete genome	370	`.t.........t......_`	387	84
AB550332.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org	409	`.t.........t......_`	426	84
AB550333.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1	409	`.t.........t......_`	426	84
AB575939.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365	340	`.t.........t......_`	357	84
AB575941.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248	348	`.t.........t......_`	365	84
AB575942.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369	343	`.t.........t......_`	360	84
AB575948.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101	366	`.t.........a......_`	383	84
DQ341360.1	Human enterovirus 71 isolate J115-MAL-01, complete genome	410	`__.........t......_`	425	78
DQ452074.1	Human enterovirus 71 strain 804/NO/03, complete genome	412	`__....c..........._`	427	78
AF302996.1	Enterovirus 71 strain SHZH98 polyprotein gene, complete cds	410	`.g.............a.a.`	428	84
AF499639.1	Human coxsackievirus A17 strain G12, complete genome	412	`___...a..........._`	426	73
AF499639.1	Human coxsackievirus A17 strain G12, complete genome	6826	`_...g........._____`	6814	63
DQ358078.1	Human coxsackievirus A20 serotype CAV20a, complete genome	414	`___...a..........._`	428	73
HQ400942.1	Human enterovirus 71 HZ08/Hangzhou/2008, complete genome	5794	`____..........t.g..`	5780	68
HQ423143.1	Human enterovirus 71 strain KM186/09, complete genome	5794	`____..........t.g..`	5780	68
EF555644.1	Human enterovirus 99, complete genome	4886	`...........________`	4876	57

VIRsiRNAdb

Database of Viral siRNA / shRNA